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2.1 - AS OCR
Topic 2.1 of AS OCR new 2015/2016 course
163
Biology
Advanced
03/26/2016

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Term
define magnification
Definition
the number of times larger an image appears, compared with the size of the object
Term
what type of magnification do microscopes produce?
Definition
linear magnification
Term
define resolution
Definition
the smallest distance between 2 points on a specimen that can still be distinguished by the microscope
Term
what does a higher resolution do to an image?
Definition
makes it clearer
Term
define an optical/light microscope
Definition
a microscope that uses lenses to focus a beam of light
Term
Explain how an optical microscope works
Definition
1. Place specimen in slide 2. Clip to
stage 3. Place the lowest power objective
lens over the slide by using the nose
piece 4. Adjust coarse focus knob while
looking into eyepiece 5. Adjust iris
diaphragm for optimum light 6. Twist
nose piece to a higher magnification 7.
Look down ocular tube & focus with fine
focus knob 8. Repeat
Term
Name 10 key components of an optical microscope
Definition
Slide, clips, stage, nose
piece, objective lens,
coarse focus knob,
eyepiece, fine focus
knob, iris diaphragm,
ocular tube
Term
Name 2 things specimens have to be
Definition
thin and stained
Term
what does staining provide?
Definition
contrast
Term
what type of slide do living organisms need?
Definition
cavity slide
Term
name 4 advantages of light microscopes
Definition
1. Cheap 2. Easy to use 3. Portable 4. Can study dead and living organisms
Term
what is the maximum magnification of a light microscope?
Definition
x1500
Term
what is the maximum resolution of a light microscope?
Definition
200nn / 0.2 micrometers because they use visible light
Term
name 2 disadvantages of light microscopes
Definition
1. low magnification 2. low resolution
Term
what is the equation for working out total magnification?
Definition
Total magnification
= mag power of objective lens x
mag power of eyepiece lens
Term
define photomicrograph
Definition
a photo image seen by a light microscope
Term
Name the 2 types of electron microscope
Definition
1. laser scanning electron microscope 2. transmission electron microscope
Term
what is the wavelength of an electron?
Definition
0.004nm
Term
how do electron microscopes work?
Definition
The beam of fast
electrons are fired
from a cathode and
then focused onto a
photographic plate
Term
what condition do electron microscopes have to be in? Why?
Definition
vacuum - prevents electrons hitting particles
Term
in a transmission electron, how are specimens stained?
Definition
They are
chemically fixed by
being dehydrated
and stained by
metallic salts
Term
how do transmission electron microscopes work?
Definition
Some electrons
from the beam
pass through and
are focused on a
photographic plate
Term
what is the magnification of a transmission electron microscope?
Definition
x500,000
Term
what is the resolution of a transmission electron microscope?
Definition
0.1nm
Term
what type of image does a transmission microscope produce?
Definition
a 2D black and white electron microscope
Term
what is the maximum magnification of a scanning electron microscope?
Definition
x200,000
Term
how do scanning electron microscopes work?
Definition
the beam of electrons causes secondary electrons to bounce off the specimen's surface and be focused on to a screen
Term
what sort of image do scanning electron microscopes form?
Definition
a 3D black and white electron micrograph
Term
how are specimens stained in a scanning electron microscope?
Definition
with a fine film of metal and placed in a vacuum
Term
name 5 disadvantages of electron microscopes
Definition
1. large = not portable 2. expensive 3. have to be trained to use one 4. specimens have to be dead 5. metallic salt stains are hazardous
Term
how do laser scanning microscopes work?
Definition
they use laser light to scan an object point by point and assemble, by PC, the pixel info into one image on a PC screen
Term
name 2 features of the images of a laser scanning microscope?
Definition
high resolution and high contrast
Term
name one special feature of a laser scanning microscope? what does this allow it to do?
Definition
they have DEPTH SELECTIVITY = can focus on structures at different depths within a specimen = can clearly observe whole living species, as well as cells
Term
give an example of how laser scanning microscopes are used in the medical profession
Definition
to observe fungal filaments within the cornea of the eye of a patient with fungal corneal infection
Term
as well as the medical profession, how else are laser scanning microscopes used?
Definition
in biological research
Term
Name 3 things you can see with an optical microscope
Definition
1. Living organisms, such as Paramecium & Amoeba 2. Human blood & cheek cells 3. thin sections of animals, plants & fungal tissue e.g. bone, muscle, leaf
Term
Name a colourless specimen
Definition
paramecium
Term
Name 3 ways you can see unstained specimens
Definition
1.Use light interference, rather than light absorption 2. use a dark background 3. stain it
Term
define a stain
Definition
a coloured chemical that binds to molecules in or on the specimen, making it easy to see
Term
name a type of staining
Definition
differential staining
Term
define differential staining
Definition
stains that bind to specific cell structures, staining each structure differently so the structures can be easily identified with a single preparation
Term
how does acetic orecin work?
Definition
binds to DNA & stains chromosomes red
Term
how does eosin work?
Definition
stains cytoplasms
Term
how does sudan red work?
Definition
stains lipids
Term
how does iodine in potassium iodide solution work?
Definition
stains cellulose in plant cell walls yellow & stains starch blue/black
Term
explain how specimens are prepared
Definition
1. dehydrate specimen 2. embed in wax (prevents distortion in slicing) 3. thinly slice specimen to make specimens 4. stain and mount with special chemicals for preservation
Term
what is the equation for magnification?
Definition
magnification (M) = photomicrograph (I) / actual image size (A)
Term
how do you convert from mm to micrometers?
Definition
times mm by 1000
Term
how would you work out the actual length of a photomicrograph from just knowing its magnification?
Definition
1. measure the widest length of the photomicrograph 2. convert to micrometers 3. divide by magnification
Term
explain how you would draw a slide
Definition
1. use a prepared slide such as a transverse section through a dicot leaf 2. set up and focus 3. draw with a sharp pencil 4. use a title 5. indicate scale 6. make a low-power plan of specimen (do not draw individual cells or shade) 7. label 8. draw a high-power plan (draw cells) and label
Term
define an eyepiece graticule
Definition
a measuring device that is placed in the eyepiece of a microscope and acts as a ruler when you view an object under the microscope
Term
how is the eyepiece graticule 'put onto' the specimen?
Definition
it is superimposed and the dimensions of the specimen can be measured in eyepiece units
Term
why does an eyepiece graticule have to be calibrated for each different objective lens?
Definition
because when a slide is magnified it doesn't actually increase in size so the eyepiece scale has to be calibrated
Term
what is used to calibrate an eyepiece graticule?
Definition
a stage graticule
Term
define a stage graticule
Definition
a small scale measuring device that is placed on a microscope stage and used to calibrate the value of eyepiece divisions at different magnifications
Term
explain how you would use a stage graticule to calibrate the eyepiece graticule if the ruler of the stage graticule is 1000 micrometers long and divided into 100 divisions, and the total magnification is x40
Definition
1. insert eyepiece graticule into x10 eyepiece of microscope 2. put stage graticule on stage & bring it to focus up to a total magnification of x40 3. align eyepiece graticule and stage graticule 4. the stage graticule corresponds to 40 eyepiece divisions 5. so each eyepiece division = 1000/40 = 25 micrometers
Term
name 4 types of organism whose cells are eukaryotic
Definition
animals, plants, fungi, protocists
Term
name 8 features eukaryotic cells have
Definition
1. nucleus with nuclear envelope and chromosomes 2. nucleolus containing RNA 3. cytoplasm 4. cytoskeleton 5. plasma membrane 6. membrane-bound organelles 7. small vesicles 8. ribosomes
Term
define an organelles
Definition
small structures within cells, each of which carries out a specific function
Term
how do we know the structure of organelles?
Definition
electron microscopes
Term
how do we know the function of organelles?
Definition
biochemistry research
Term
does the nucleus have a single or double membrane?
Definition
double
Term
what is the name of the nucleus' double membrane?
Definition
nuclear envelope
Term
name a feature of the nuclear envelope, and explain what this allows it to do
Definition
it has pores = allows larger substances (e.g. mRNA) out and others in (e.g. steroid hormones)
Term
the inner and outer membranes of the nuclear envelope can fuse. what does this allow?
Definition
ribosomes and dissolved substances to pass through
Term
how many micrometers is the nucleus?
Definition
10 - 20 micrometers
Term
what type of microscope can see a nucleus?
Definition
light microscope
Term
what does the nucleus contain?
Definition
nucleolus
Term
does the nucleolus have a membrane?
Definition
no
Term
what does the nucleolus contain?
Definition
RNA and DNA
Term
what is the function of the nucleolus?
Definition
to create ribosomes
Term
besides the nucleolus, what else the nucleus contain?
Definition
chromatin
Term
define chromatin
Definition
the genetic material, consisting of DNA wound around histone proteins
Term
when a cell divides, chromatin coils to form what?
Definition
chromosomes
Term
what chromatin make up?
Definition
the organism's genome
Term
define the rough endoplasmic reticulum
Definition
a network of membranes containing fluid filled sacs called cisternae
Term
what is the function of the cisternae
Definition
to form channels for transporting substances from one area of a cell to another
Term
what is the rough ER coated with?
Definition
ribosomes
Term
what is the function of the ribosomes?
Definition
to assemble amino acids into proteins
Term
where do the proteins that the ribosomes make go to?
Definition
they pass through the membranes into the cisternae to be transported to the golgi apparatus for modifying and packaging
Term
what is the only structural difference between the rough ER and the smooth ER
Definition
the smooth ER does not have ribosomes coated on it
Term
what does the smooth ER contain?
Definition
enzymes that catalyse reaction involved with metabolism (e.g. synthesis of cholesterol, lipids & steroid hormones)
Term
name 3 things the smooth ER is involved with in terms of lipids
Definition
absorption, synthesis and transport
Term
define the Golgi apparatus
Definition
a stack of membrane-bound flattened sacs
Term
what bring materials to and from the golgi apparatus?
Definition
secretory vesicles
Term
name the 2 main functions of the golgi
Definition
modification and packaging of proteins
Term
give 3 examples of how a golgi modifies
Definition
1. adds sugar molecules to make glycoproteins 2. adds lipid molecules to make lipoproteins 3. folds proteins into 3D shape
Term
the golgi packages proteins into vesicles which are pinched off. name 2 places the vesicle will take the protein
Definition
1. to be stored in the cell 2. moved to plasm membrane for either incorporation into plasma membrane of exportation outside cell
Term
name 3 shapes mitochondria can be
Definition
1. spherical 2. rod-shaped 3. branched
Term
how many micrometers long are mitochondria?
Definition
2-5 micrometers
Term
are mitochondria single or double bounded?
Definition
double
Term
what is between the inner and outer membranes of the mitochondria?
Definition
fluid-filled space
Term
what is the inner membrane folded into? what is it coated in? what does this increase?
Definition
folded into CRISTAE, coated in electron carriers and enzymes, increases SA
Term
what is the centre of the mitochondria called?
Definition
matric
Term
what is the function of the mitochondria?
Definition
to produce ATP during aerobic respiration
Term
what do mitochondria do in terms of replication?
Definition
they self-replicate
Term
where are mitochondria abundant?
Definition
in cells where there is a lot of metabolic activity e.g. liver cells
Term
how big are chloroplasts, in micrometers?
Definition
4-10 micrometers
Term
where are chloroplasts only found?
Definition
plant cells and some protocists
Term
where are chloroplasts most abundant in plants?
Definition
in the palisade mesophyll later
Term
are chloroplasts single or double membrane bound?
Definition
double membrane-bound
Term
what does the inner membrane contain?
Definition
membrane sacs called thylakoids
Term
what do thylakoids contain?
Definition
chlorophyll
Term
what is a stack of thylakoids called?
Definition
A granum (pl. grana)
Term
what is the fluid-filled matrix in the middle called?
Definition
stroma
Term
what are the joins between the grana called?
Definition
the intergranal lamallae
Term
what is the space between the inner and outer membranes called?
Definition
intermembrane compartment
Term
what do chloroplasts contain?
Definition
loops of DNA and starch grains
Term
what is the function of the chloroplasts?
Definition
photosynthesis - light energy is trapped by chlorophyll in granum to make ATP, water is split to supply hydrogen bonds which reduces CO2 using energy from ATP to make carbohydrates in the stroma
Term
what is the single membrane of a vacuole called?
Definition
tonoplast
Term
what does the vacuole contain?
Definition
water and solute
Term
in plant cells vacuoles are large and permanent. in animal cells they are...
Definition
small and temporary
Term
explain the function of a vacuole
Definition
when it is full it pushes against cell wall = makes cell turgid = stability & support
Term
define lysosomes
Definition
spherical sacs formed by the Golgi apparatus
Term
do lysosomes have a single or double membrane?
Definition
single
Term
what do lysosomes contain? what does its contents do?
Definition
hydrolytic enzymes - hydrolyse and digest
Term
what is the function of the lysosomes?
Definition
to separate hydrolytic enzymes from rest of cell
Term
where are lysosomes abundant?
Definition
phagocytic cells, such as neutrophils and macrophages
Term
what is the role of lysosomes in phagocytic cells?
Definition
digest foreign matter engulfed by the phagocytic cell by fusing to phagosome surrounding the foreign matter
Term
define cilia
Definition
hairs which protrude from the cell and rhythmically beat to move mucus, dust and dirt
Term
what are cilia formed from?
Definition
centrioles
Term
what do cilia contain? and in what formation?
Definition
microtubules in a 9+2 arrangement
Term
what does one cilia act as? what does this allow?
Definition
it acts as an antenna as it contains receptors. this allows cells to detect signals about its immediate environment
Term
what is an undulipodia?
Definition
a protrusion from the cell which allows movement
Term
what does undulipodia contain?
Definition
microtubules
Term
what is the only human cell with an undulipodia?
Definition
a spermatozoon cell = allows movement
Term
name 4 organelles without membranes
Definition
1. ribosomes 2. centrioles 3. cytoskeleton 4. cell wall
Term
what is the diameter of a ribosome in nanometers?
Definition
20nm
Term
what are ribosomes made of?
Definition
ribosomal RNA
Term
what fits between the small and large subunits of a ribosome?
Definition
mRNA for protein synthesis
Term
name 2 places ribosomes are found
Definition
1. free in the cytoplasm for the assembly of proteins that will be used in the cell 2. bound to the rough ER for protein synthesis
Term
what are centrioles made of?
Definition
2 bundles of microtubules at right angles to each other
Term
what are microtubules made of?
Definition
tubulin protein subunits
Term
how are the microtubules arranged in a centriole?
Definition
They are arranged to from a cylinder
Term
how do centrioles form cilia or undulipodia?
Definition
1. before a cell divides, the spindle, made of threads of tubulin, forms from the centriole 2. chromosomes attach to the middle of the spindle and motor proteins walk along the tubulin thread pulling the chromosomes to opposite ends of the cell 3. the centrioles multiply & line up below the cell surface membrane 3. the microtubules sprout outwards from each centriole = cilium/undulipodium
Term
where are centrioles only found?
Definition
animal cells, with the exception of some unicellular green algae (e.g. chlamydomonas)
Term
define a cytoskeleton
Definition
a network of protein-structures within the cytoplasm
Term
name 4 elements of a cytoskeleton
Definition
microfilaments, microtubules, cytoskeletal motor proteins, intermediate filaments
Term
what shape are the microfilaments?
Definition
rod shaped
Term
what are the microfilaments make of?
Definition
subunits of the protein actin
Term
what is the diameter of each microfilament in nanometers?
Definition
7nm
Term
what shape are microubules?
Definition
straight and cylindrical
Term
what are microfilaments made of?
Definition
tubulin
Term
what are the cytoskeletal motor proteins?
Definition
molecular motors & also enzymes which have a site that binds to and allows hydrolysis of ATP as their energy source
Term
what is the function of the microfilaments?
Definition
support, mechanical strength, maintains shape, allows cell movement
Term
what are functions of the microtubules?
Definition
1. shape and support 2. form a track along which motor proteins drag cells from one area of cell to another 3. form a spindle before cell divides = allows chromosome movement 4. make up cilia, undulipodia and centrioles
Term
name 2 functions of the intermediate filaments
Definition
1. anchor nucleus within cytoplasm 2. extend between cells in some tissues = allows cell signalling = stabilises tissues
Term
what is the plant cell wall made of?
Definition
bundles of cellulose fibres (beta glucose)
Term
what are cells absent from?
Definition
animal cells
Term
name 4 functions of plant cell walls
Definition
1. strength & support 2. shape 3. support of whole plant 4. permeable = solution can get through
Term
what are fungi cell walls made of?
Definition
chitin
Term
explain how a protein is made and secreted
Definition
1. the gene that has the coded instructions for a protein housed into the chromatin in the nucleus is TRANSCRIBED onto a length of RNA to form mRNA 2. Copies of the mRNA are made 3. mRNA passes out of pores in the nuclear envelope to the ribosomes 4. as the ribosome, the instructions are TRANSLATED to form molecules of the protein 5. the molecules pass into the cisternae of the rough ER and travel along 6. vesicles with the protein molecules inside are pinched off from the rough ER and pass via microtubules and motor proteins to the golgi apparatus 7. vesicles fuse with the golgi apparatus 8. golgi packages, processes and functionalises the protein molecules 9. packaged protein molecules are pinched off in vesicles from golgi and move towards plasma membrane 10. vesicles and plasma membrane fuse, releasing the protein to the outside of the cell
Term
what has prokaryotic cells?
Definition
bacteria
Term
name 5 similarities between eukaryotic cells and prokaryotic cells
Definition
have 1. plasma membrane 2. cytoplasm 3. ribosomes 4. DNA 5. RNA
Term
what is different about prokaryotic cells compared to eukaryotic cells? Give 7 differences
Definition
1. smaller (1-5 micrometers) 2. less developed cytoskeleton with no centrioles 3. no nucleus 4. no membrane-bound organelles 5. cell wall is made of peptidoglycan 6. smaller ribosomes 7. naked DNA - floats around
Term
name 4 things some prokaryotic cells have
Definition
1. protective waxy capsule surrounding cell wall 2. plasmids 3. flagella 4. pili
Term
what do the flagella allow?
Definition
movement
Term
what do the pili allow?
Definition
bacteria to adhere to host cells or each other
Term
what 2 shapes can prokaryotic cells be?
Definition
1. bacillus (rod) 2. coccus (sphere)
Term
how do prokaryotic cells divide?
Definition
binary fission
Term
define binary fission
Definition
a type of division found in prokaryotic cells and organelles such as chloroplasts and mitochondria
Term
why can't prokaryotic cells carry out mitosis?
Definition
because they have no linear chromosomes
Term
what is the endosymbiont theory?
Definition
that eukaryotic cells evolved from prokaryotes 1.5-2 billion years ago
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