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Biochem 4
Clinical Correlations
39
Biochemistry
Graduate
09/29/2010

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Term
germline vs somatic mutation
Definition
germline- most serious, passed on
somatic- molecular basis for cancer
Term
bleomycin
Definition
chemotheraoeutic. generates oxidative free radicals that cause DNA double strand breaks
Term
xeroderma pigment (XP)
Definition
errors in NER. can't repair T-T dimers.
Term
Doxorubicin
Definition
acts on topoisomerase II- inhibition of ligase (anthracycline- forms tripartite complex with DNA). leads to double strand breaks which leads to cell death
Term
nalidixic acid
Definition
inhibits bacterial topoisomerase II (antibiotic)
Term
cirprfloxacin
Definition
inhibits bacterial topoisomerase II (antibiotic)
Term
Huntingson, Myotonic dystrophy, Fragile X syndrome
Definition
triplet expansion caused by insertion/deletion leading to frameshift mutation (fs.mut.responsible for 25% of genetic diseases)
Term
Azoospermic
Definition
no mature sperm cells- no synaptonemal complex (pairs maternal and paternal homologs together). no meiosis I
Term
Bloom Syndrome
Definition
dwarfism, immunodeficiency, decreased fertility. mutation in BLM gene that encodes for DNA helicase. Replication fork progression delayed, also perturbs homolog recombination
Term
Lynch Syndrome (HNPCC)
Definition
heritable cancer syndrome. 80% chance of developing cancer. defects in mismatch repair system due to mutations in MLH1 or MLH2. microsatellite instability
Term
cytarabine (Cytosar, Tarabine)
Definition
Treats Leukemia- analogue of cytidine with arabinose. Active cytarabine tri-phosphate competes with deoxyribonuclease for DNA polymerase binding. Replication and repair blocked
Term
Cyclophosphamide (Cytoxan, Neosar)
Definition
Hodgkin's, lung, breast cancer. Pro-drug- active phosphoramine mustard in liver. Bi-functional: alkylating agent- forms DNA cross-links, blocks replication, programmed cell death
Term
A. phalloides
Definition
death cap mushroom. 90% of mushroom deaths. has alpha-amanitin- blocks RNA pol II- no mRNA synthesis
Term
Rifampicin
Definition
antibiotic. produced by streptomycetes in soil. inhibitor of bacterial RNA polymerase
Term
B-thalassemia
Definition
incorrect splicing of beta unit for Hb. Less mature Hb- profound anemia. Beta '0' mut= destroyed normal acceptor at end of exon 2, uses cryptic splice, part of intron incorporated. Beta '+'= new acceptor site in intron 1
Term
PKU
Definition
lack of phenylalanine dehydroxylase. mutation in gene that codes for it- 5' splice donor site base change- incorrect splicing- truncated protein- rapidly degraded.
Term
Rubenstein-Taybi Syndrome
Definition
pt mutation/small deletion/rearrangement in gene that codes for CBP, an activating protein (functions as a HAT) in gene for phosphoenolpyruvate carboxykinase
Term
Tamoxifen
Definition
competitive inhibitor of estrogen receptor in DNA binding. Binds, doesn't recruit more proteins- no transcription of estrogen sensitve genes. Treatment for breast cancer
Term
streptomycin
Definition
antibiotic. binds small subunit of ribosome
Term
Neomycin/gentamycin
Definition
antibiotic. binds ribosome/mistranslation of codons
Term
Tetracyline
Definition
Antibiotic. blocks A site
Term
Chloramphenicol
Definition
antibiotic. prevents peptide bond formation
Term
Ricin
Definition
removes adenine base in carious spost of large subunits in eukaryotic cells. leads to death
Term
Diptheria toxin
Definition
inactivates EF-2 by ADP-Ribosylation in eukaryotic cells
Term
CDG's
Definition
congential glycosylation disorders. impairs N-linked glycosylation of proteins, prevents secretion, impairs extracellular enzymatic reactions. presents with severe symptoms- hypotonia, hypoglycemia
Term
Scurvy, Ehlers Danlos, Osteogenesis
Definition
collagen deficiency. failure to hydroxylate proline
Term
multiple sulfatase deficiency (MSD)
Definition
failure to convert cysteine to aldehyde to c-alpha-formylglycine which is needed for lysosomal sylfatases.
Term
deafness-dystonia syndrome
Definition
mitochondrial disorder. no TIM- no cell engery production, no func. mitochondria
Term
cystic fibrosis
Definition
protein sorting disorder. deletion of 1 codon from CFTR1- gene interferes with folding- sent to cytosol and degraded
Term
I-cell disease
Definition
transfer of phosphate to mannose impaired. missing signal for lysosome destination-lysosome function function impaired- accumulation of undegraded proteins. can see dense bodies of nonfunc lysosome in fibroblasts, lysosomal proteins in serum
Term
Ataxia telangiectasia
Definition
autosomal recessive disorder- ATM (protein for signaling radiation damage to DNA) mutated. p53 not activated- no apoptosis
Term
Burkitt's lymphoma
Definition
translocation of chromosomes 8 and 14 (mys to 14 next to immunoglobulin protein), over produced- DNA replication unregulated. most leukemias and lymphomas have translocation. tumors can also activate myc by gene amplication
Term
Familial breast cancer
Definition
mutation in BRCA1 or BRCA 2. double strand break repair
Term
Cervical cancer
Definition
viral protein E6 binds p53, inhibits
Term
Li-Fraumeni
Definition
dominant mutation in p53
Term
Rb
Definition
inherited: mution in RB1 gene. with additional mutation in somatic allele- no funcional Rb- tumor in both eyes. Sporadic- 2 somatic mutations in same retinal cell. tumor in one eye, later.
Term
CML
Definition
chronic myeloid leukemia. phil.chromo: reciprocal translocation between 9 and 22. effusion of two genes: BCR ad ABL. ABL codes for tyrosine kinase that normally regulates apoptosis. BCR-ABL fusion- constitutively active protein kinase and cell division. Imatinib mesylate is TK inhibitor.
Term
FAP
Definition
autosomal dominant mutation in APC gene- develop polyps. loss of 2nd allele- adenomatious polyp- carcinoma. also lose k-Ras, DCC, p53
Term
non-small cell lung cancer
Definition
mutation in gene for EGF receptor. respond well to TK inhibitor gefitnib
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