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Biostats Test 3
Testing strategies
32
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Graduate
12/02/2010

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Term
One-sample T-test
Definition
Application: when a mean from one sample needs to be compared to a population mean obtained from literature

Assumptions:
-Dependent variable is normally distributed
-Data points are independent of each other
-Dependent variable must be ordinal, interval, or ratio level
Term
Calculating the test statistic
Definition
[Mean (from sample) - population mean]/standard error of the mean

If the computed t value is greater than the critical t-value reject the null hypothesis
Term
Confidence interval caluculation
Definition
Difference in mean +/- (t score x SE)
Term
Independent sample t-test
Definition
Applications: when a mean from one sample/group needs to be compared to a mean from a different sample/group

Assumptions:
-Dependent variable is normally distributed
-Data points are independent of each other
-Dependent variable must be ordinal, interval, or ratio level
-The variances of the two comparisons groups must be equal (only if the sample sizes of the 2 groups are different)
-Not more than 2 groups/levels
Term
Assumption of equality of variances is violated?
Definition
If variance in the two groups is equal, the denominator in the formula for t-statistic uses the pooled variance from the 2 groups

If variance in the 2 groups is not equal, the formula for t statistic does not pool variance from the 2 groups (Use modified formula)
Term
Paired sample T-test
Definition
Applications:
-Change in scores or clinical levels after an intervention (Pre- & post studies)
-Comparing individually matched samples

Assumptions:
-Dependent variable is normally distributed
-Data points are independent of each other
-Dependent variable must be ordinal, interval or ratio level
-Not more than 2 groups or time points
Term
What is ANOVA?
Definition
An extension of a t-test

A way to test for differences between means of:
-More than 2 groups
-More than 1 independent variable
-more than 2 time periods of follow-up
Term
One-way ANOVA
Definition
Used when there is a single independent variable and the dependdent variable is continuous

Applications: Comparison of means of two or more groups

Assumptions:
-Dependent variable must be ordinal, interval, or ratio level
-Dependent variable is normally distributed
-Independent variable is categorical
-Data points are independent of each other
-The variances of the comparison groups MUST BE EQUAL
Term
Factoria ANOVA
Definition
Designs involving more than one independent variable
-A single design becomes an efficient way of examining the effect of 2 independent variables
-Aids in the interpretation of both main and interaction effects
Term
Repeated measures ANOVA
Definition
Used when you have to assess measurements over time with more than 2 time periods
-Can be considered as a factorial ANOVA where one independent variable is type of drug and the other independent variable is time
Term
Rationale for the F-test
Definition
Total variability in the data= (MS total)

Variability between the different groups= MS between
-Represents the spread of group means around the total grand mean
Variability within the groups = MS within
-Represents the spread of scores within each group around the group mean
Term
Calculating the F-test
Definition
F= (MS between)/(MS within)

If the null hypothesis is true and there is no effect, then F will fluctuate around 1
If null hypotesis is not true and there is effect, then large positive values of F are expected
Term
What if the assumption of equality of variances is violated?
Definition
-If variance in the comparison groups are equal, use the F test from the ANOVA table
-If variance in the comparison groups are not equal, use a modified formula (Welch/Brown-Forsythe)
Term
Post-Hoc tests in ANOVA
Definition
-ANOVA is an omnibus test
-The rejection of the null hypothesis in a one-way ANOVA simply tells us that the population means are not all equal
-It doesn't say which ones are different
Term
Per Comparison Error (PC)
Definition
Normal level of significance
Normally set at (0.05)
Term
Family Wise Error
Definition
Based on the number of post-hoc comparisons
FWE= 1-(1-a)^c
c= # of comparison models
a= your Per Comparison error
Term
Non-parametric tests
Definition
Used when the data is skewed
Typically for ordinal data (Likert scales)

Don't always use these because they are less powerful/sensitive (higher chance of type 2 error)
-Interpreting results is not as intuitive

-Cannot be used for complex analytical designs
Term
Diagnosing non-normal distribution
Definition
-Visual detection
-Statistical tests (Kolmogorov-Smirnov). If p is less than 0.05 then the null hypothesis of "This distribution is not different from a normal distribution" is rejected and we conclude that the distribution is not normal
Term
Mann-Whitney U Test/Wilcoxon Rank Sum Test
Definition
Applications: When a mean from on sample/group needs to be compared to a mean from a different sample/group
-Same as independent samples t-test

Assumptions:
-Data points are independent of each other
-Dependent variable must be ordinal, interval, or ratio level
-Not more than 2 groups/levels

If the computed test value is greater than the critical value, reject the null hypothesis
If the p value is less than 0.05, reject the null hypothesis
Term
Kruskal-Wallis test
Definition
Applications: Comparison of different values of two or more groups
-Same as one-way ANOVA

Assumptions:
-Dependent variable must be ordinal
-Independent variable is categorical
-Data points are independent of each other

Post-Hoc tests are not available on SPSS
Term
Bonferroni correction
Definition
Divide 0.05 by the number of comparisons
# of comparisons = k(k-1)/2
Term
Wilcoxon Signed-Ranks test
Definition
Applications:
-Change in scores or clinical levels after an intervention (pre-post studies)
-Comparing individually matched samples
Same as Paired sample t-test

Assumptions:
-Data points are independent of each other
-Dependent variable must be ordinal, interval, or ratio level
-Not more than 2 groups or time points
Term
Summary of non-parametric tests
Definition
-When data violate the assumptions of parametric tests we can sometimes find a non-parametric equivalent
-
Term
Analysis of frequencies
Definition
-When both the independent and dependent variable are measured at the nominal/categorical level
-The data consists of frequencies
-Typical statistical tests cannot be applied as we are dealing with percentages/proportions rather than means/medians
-Use a separate class of non-parametric tests: X^2 test
Term
Types of Chi-squared tests (X^2)
Definition
-Binomal
-Test of association
-McNemar's Test
Term
Types of Chi-squared tests (X^2)
Definition
-Binomal
-Test of association
-McNemar's Test
Term
Binomial Test
Definition
Applications:
-When proportion from one sample needs to be compared to a proportion from a population

Assumptions
-Data points are independent of each other
-The data must be binominal (not more than 2 categories)
Steps:
1. Draw the cells
2. Fill in the observed frequencies basted on your study sample
3. Fill in the expected frequencies. The expected frequencies are always based on your null hypothesis being true.
Term
Calculation for Chi-squared
Definition
X^2= Sum of (O-E)^2/E (add both groups)
-Calculate for both groups (adherent and non adherent)
Term
Test of Independence
Definition
Applications: To examine the association/lack of association btwn categorical variables

Assumptions:
-Data points are independent of each other
-Both the independent and dependent variables must be categorical and measured at the nominal/ordinal level
-The categories must be exhaustive and mutually exclusive
Term
Coefficients of Associations
Definition
Chi squared does a statistical test to examine the presence or absence of association
The strength of association is not assessed
Relative risk & odds ratio are typically used for this
Term
McNemar Test
Definition
Applications:
-Change in value/category after an intervention
-Comparing individually matched samples

Assumptions:
-Data points are independent of each other
-The dependent and the independent variables must be nominal/categorical

Degrees of freedom= (# of rows-1)(# of columns-1)
Term
Confidence interval calculations for RR & OR
Definition
95% CI= RR [1 +/- (1.96/square root of Chi squared)]
Same for OR, just substitute OR where RR is in the equation
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