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Genetics Chapter 10
Genetics Chapter 10 Vocabulary
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Undergraduate 3
10/11/2011

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Term
Gene Expression
Definition
The molecular processes by which the information contained in genes is converted into polypeptide chains that determine the metabolic and developmental capabilities of cells and organisms
Term
Transcription
Definition
The overall process by which the segment corresponding to a particular gene is selected and an RNA molecule is made
Term
RNA processing
Definition
when RNA undergoes chemical modification in the nucleus
Term
R Group
Definition
genearlly chains or rings of carbon atoms bearing various distinguishing atoms. The simplest R groups are those of Glycine (-H) and Alanine (-CH3)
Term
Amino Terminus
Definition
The one end of of a polypeptide molecule that has a free amino group
Term
Carboxyl Terminus
Definition
The one end of a polypeptide molecule that has a free carboxyl group
Term
How are polypeptides synthesized?
Definition
By adding successive amino acids to the carboxyl end of the growing chain
Term
Protein Subunits
Definition
When protein molecules consist of more than one polypeptide chain
Term
Colinearity
Definition
The sequence of base pairs in DNA determines the sequence of amino acids in the polypeptide in a colinear, or point-to-point, manner
Term
RNA Polymerase
Definition
The enzyme used in transcription that binds to a promoter and then initiates transcription
Term
Promoter
Definition
a DNA sequence of 20-200 nucleotides in length 
Term
Transcription Start Site
Definition
A nucleotide in or near the promoter 
Term
Difference between DNA polymerase and RNA polymerase is that
Definition
RNA polymerase is able to initiate chain growth without a primer
Term
RNA polymerase holoenzyme
Definition
the active form of an RNA polymerase
Term
RNA Polymerase I
Definition
Used exclusively in producing the transcript that becomes processed into ribosomal RNA. The promoter region includes the transcription start site.
Term
RNA Polymerase II
Definition
Responsible for transcribing all protein-coding genes as well as the genes for a number of small nuclear RNAs used in RNA processing. The promotoer is located near the transcription start site but upstream (on the 5' side) of it
Term
RNA Polymerase III
Definition
Used in transcribing all transfer RNA genes as well as the 5S component of ribosomal RNA. The promoter is located near the transcription start site but downstream (on the 3' side) of it.
Term
TATA Box
Definition
The consensus motif that is usually located near position -10.
Term
The more closely the promoter elements resemble the consensus sequence....
Definition
The stronger the promoter.
Term
Sigma Factor
Definition
a protein that allows RNA polymerase to bind properly to a promoter region
Term
Chain Initiation
Definition

-First step in transcription

  1. TATA-box binding protein binds promoter DNA and bends it which brings the promoter DNA into contact with the TFIIB component
  2. Promoter follows a straight path until a point 25-30 bp distant from the TATA box and the transcription start site is brought into position near the polymerase active site
  3. TFIIE joins the complets and recruits TFIIH which destabilizes the DNA duplex
  4. Synthesis begins in the 5' to 3' direction
Term
Chain Elongation
Definition

-2nd step in transcription

  1. RNA nucleotides are added to the growing transcript
  2. Each incoming nucleotide is added to the 3' end of the transcript at a site 3 nucleotides from the point at which the DNA template strand unwinds from the nontemplate DNA 
Term
Chain Termination
Definition
RNA polymerase reaches a chain-termination sequence and bot the newly synthesized RNA molecule and the polymerase are released.
Term
Two Types of Termination are:
Definition
  1. Self-terminating which depends only on the nucleotide sequence in the DNA template (in bacteria hairpin loop)
  2. Requires the presence of a termination protein
Term
Primary Transcript
Definition
The RNA molecule produced from a DNA template
Term
Open Reading Fram (ORF)
Definition
specifies the order in which the amino acids are present in the polypeptide chain
Term
Introns
Definition
segments that are excised from the primary transcript
Term
Exons
Definition
the sequences in a gene that are retained in the messenger RNA after the introns are removed from preexisting genes
Term
RNA Splicing
Definition
The excision of the introns and the joining of the exons 
Term
Coupled Processes
Definition
linked by physical or functional interactions so that the occurrence of one process initiates or regulates the next
Term
Spliceosomes
Definition
Nuclear particles where RNA splicing takes place
Term
snRNPs
Definition
Small nuclear particle that contains short RNA molecules and several proteins that are involed in intron excision and splicing and other aspects of RNA processing
Term
Folding Domains
Definition
Relatively autonomous folding units in proteins
Term
Exon-shuffle model
Definition
The model of protein evolution through the combination of different exons
Term
Nonsense-mediated decay
Definition
A process in which a messenger RNA containing a premature chain-terminating codon is destroyed in the first round of translation owing to the presence of proteins that are bound to the exon-exon junctions.
Term
Frameshift Mutations
Definition
A mutational event caused by the insertion or deletion of one or more nucleotide pairs in a gene, resulting in a shift in the reading frame of all codons following the mutational site.
Term
Wobble
Definition
The acceptable pairing of several possible bases in an anticodon with the base present in the third position of a codon
Term
Nonsense Mutation
Definition
A nucleotide substitution that creates a stop codon and results in premature chain termination during translation
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