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Microbiology FINAL
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177
Agriculture
Pre-School
04/18/2011

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Term
chemotherapeutics
Definition
chemicals that treat human diseases
Term
-static
Definition
inhibits growth.
Term
-cidal
Definition
kills organisms
Term
targets of microbes in harming them
Definition
cell wall synthesis
protein synthesis
nucleic acid synthesis
cell membrane damage
structural analogs
Term
desiccation
Definition
removing the moisture to kill microbes
Term
most resistant to killing?
Definition
endospores of bacteria
Term
least resistant to killing?
Definition
viruses with lipid envelopes. the envelope makes them more vulnerable
Term
filtration
Definition
high concentrations of salt in foods to inhibit growth
water in cell is drawn out by osmosis
cell dessicates

traps bacteria
Term
types of radiation
Definition
ionizing- denature dna. more dangerous
non-ionizing- uv light thymine dimer fused together. disinfects air, surfaces of objects
Term
chemical methods of microbial control
Definition
phenols
alcohols
halogens
oxidizing agents
surfactants
heavy metals
gaseous agents
antimicrobics
Term
chemical methods of microbial control vary with
Definition
amount of organic matter
Term
oxidizing agents
Definition
damage everything, esp. proteins
remove electrons
high level disinfectants and antiseptics

ie ozone, peroxide, superoxide
Term
surfactants
Definition
surface active chemicals that reduce surface tension of solvents to make them more effective at dissolving solutes

ie. soaps and detergents and quats
Term
heavy metals ions
Definition
alter the 3d shape of proteins, messes up their function
low-level
Term
antibiotics in nature
Definition
produced by bacteria to kill others for competing purposes. we take it and alter it (semi-synthetic) or make it in the lab (synthetic)
Term
paul ehrlich
Definition
"magic bullets"
cure for syphilis
Term
alexander fleming
Definition
discovered penicillin
and antibiotics produces naturally
Term
3 basic principles of antimicrobial therapy
Definition
1) selective toxicity-kill organisms not man
2) reach- site of infection at inhibitory concentrations
3) penetrate and bind- to target, avoiding side effects.
Term
fewer drugs to treat ____ infections
Definition
eukaryotic. because we have those cells too so selective toxicity is dificil
Term
inhibition of cell wall synthesis
Definition
prevent cross-linking of NAM subunits.
beta-lactams bind to the enzymes that link them.
doesn't allow them to build a cell wall so they lyse

ie. PENICILLIN AND VANCOMYCIN
Term
penicillin
Definition
most effective of all drugs. no side effects
have beta-lactams
Term
penicillin looks like a
Definition
house with a garage
Term
inhibition of protein synthesis
Definition
prok rib's are 70s
euk rib's are 80s

selectively target TRANSLATION
can be harmful to us because mitochondria of animals and humans have 70s

ie. ERYTHROMYCIN
TETRACYCLINE
STREPTOMYCIN

kill protein synthesis, and you die
Term
disruption of cytoplasmic membranes
Definition
AMPHOTERICIN B attaches to ergosterol found in fungal membranes. humans susceptible bc we have cholesterol. bacteria lack sterols though

POLYMYXIN disrupts cytoplasmics membranes of g-. toxic to human kidneys so only used if necessary
Term
inhibition of metabolic pathways
Definition
huamns obtain folic acid from diet, so our metabolism is unaffected
but bacteria need to make folate, and TRIMETHOPRIM disrupts this process

growth factor analogs- substances that look like one that works but dont. inhibit folate synthesis

sulfa drugs- growth factor analogs
Term
inhibition of nucleic acid synthesis
Definition
block replication or transcription
HIGHLY toxic
only slight diff between prok and euk dna
distort nucleic bases which prevent processes

QUINOLONES act against prok
RIFAMPIN bind to and inhibit rna polymerase
Term
prevention of virus attachment or block virus replication
Definition
attachment can be blocked by peptide and sugar analogs of attachment/receptor proteins

HIV drugs:
reverse transcriptase inhibitors- doesnt allow RNA to DNA so can't replicate
protease inhibitors- doesnt allow proteins to be cut into normal sizes so can't replicate
Term
spectrum of action
Definition
how many diff organisms the antibiotic can kill
Term
efficacy of an antimicrobial
Definition
dosage required to be effective
routes of administration
overall safety
side effects?
Term
MIC
Definition
minimum inhibitory concentration
lowest concentration of a substance that inhibits growth of a test organism
Term
agar diffusion assay
Definition
filter papers w compounds over a lawn of bacteria
zones of inhibition (measure the diameter to get spectrum of action)
Term
three main categories of side effects
Definition
toxicity
allergies
disruption of normal microbiota
Term
toxicity
Definition
exact cause not understood
can be toxic to kidneys, liver, or nerves
Term
allergies
Definition
although allergic reactions are rare, can be life threatening
anaphylactic shock
Term
resistance by bacteria acquired 2 ways
Definition
1) new mutations of chromosomal genes
2) acquisition of r-plasmids via transformation, transduction, and conjugation
Term
multiple resistance
Definition
pathogen can acquire resistance to more than one drug at a time, common when r-plasmids exchanged.
often in hospitals bc drugs eliminate sensitive cells
Term
superbugs
Definition
resist multiple antibodies
Term
cross resistance
Definition
resistant to one antibiotic, you become resistant to that whole class of antibiotics
Term
retarding resistance
Definition
high concentrations of drug maintained in patient for long enough to kill all sensitive cells and inhibits others long enough for immune system to destroy

-limit use to antibiotics to necessary cases
-development of new variations of drugs to make them better
Term
people become resistant to antibiotics by
Definition
not finishing pills
saving them and using them later
sharing the pills
Term
altered target
Definition
target enzyme or other sites may be altered so drug cant attach/enter. resistance
Term
altered uptake
Definition
by increasing impermeability of cell wall or pumping drug out of cell. resistance
Term
drug inactivation
Definition
production of enzymes which modify or destory the antibiotic. resistance
Term
how to control the spread of antibacterial resistance
Definition
prevent dispensing of antibiotics w/o a prescription
minimize the use of antibiotics in industry
prevent misuse of antibiotics
Term
antifungals types
Definition
azoles
polyenes
Term
azoles
Definition
inhibitors of cell membrane synthesis
block biosynthesis of ergosterol

ie PENICILLIN, micanzole, ketoconazole, fluconazoleitaconazole
Term
polyenes
Definition
bind sterols in cell membrane, causing leakage of cell components and death

ie AMPHOTERICIN B
Term
for fungal infections, what is the best target?
Definition
cell membrane ergosterol
Term
who produces antibiotics in nature
Definition
1) streptomyces
2) bacillus
-both bacterial-

3) penicillum (fungus
Term
2 types of immunity
Definition
innate (natural)
acquired (adaptive)
Term
innate immunity includes
Definition
general.
skin, mucus membrane, inflammation, fever, phagocytic barriers
Term
acquired immunity includes
Definition
specific
t cells, b cells
tolerance, memory
Term
three immune lines of defense
Definition
1) skin and mucus membrane
2) cellular and humoral defenses (lysozyme, phagocytosis, etc)
3) cellular and humoral defenses (antibodies, t cells, cytokines)
Term
immune system advantages and disadvantages
Definition
adv- kills bacteria, kills bad cells, destroys viruses and toxins
disadv- allergies, rejects transplanted tissues, sometimes attacks itself
Term
key components to the immune system
Definition
blood
lymph
lymph system
Term
blood components
Definition
1) erythrocytes (RBC)
2) platelets (clotting aids),
3) immune system proteins like complement
4) immune system cells (WBC)
Term
leukocytes
Definition
white blood cells.
includes lymphocytes, monocytes, neutropils, natural killer cells
Term
lymph system
Definition
lymphoid organs: primary organs (thymus, bone marrow)
secondary organs (spleen, lymph nodes.

provides traveling. allows the news of infection to travel through the body
Term
lymph and blood are the same except for
Definition
RBC in blood
Term
antigen
Definition
non-self
must be large enough to see
all components of microbes are antigens
infected cancerous human cells
Term
most antigenic antigen?
Definition
proteins
Term
skin
Definition
perspiration (high salt)
sebaceous glands secrete oil
lysozyme destroys cell wall of bacteria
epidermis
-tightly packed layer of cells
-shed dead skin cells often
Term
mucous membranes
Definition
line all body cavities open to the outside environment
epithelium- similar to epidermis. outer covering of mucus membrane. tightly packed cells, sheds a lot

also have deeper connective layer that supports it
Term
microbial antagonism (normal flora)
Definition
competition for pathogens
helps stimulate body's second line of defense
natural populations fight for its residency
Term
second line of defense components
Definition
phagocytosis
extracellular killing by leukocytes (NK cells)
non-specific chemical defenses
INFLAMMATION
FEVER
Term
phagocytosis
Definition
bacteria physically removes and digests the infection
include:
-monocytes that circulate in blood
-those become macrophages that live in tissues
-neutrophils engulf and destroy bacteria
Term
macrophages
Definition
remove bacteria
clean up dead cells
present antigen to T cells
produce cytokines
Term
antigen-presenting cells
Definition
identify infection and tell other t cells about it. ALERT. hey i killed this
Term
lysosome
Definition
has harsh chemicals that kill cell wall of bacteria

if the fusion doesn't happen, it's phagocytic failure. capsule, carotenoid, and leukocidine inhibit phagocytic killing
Term
complement
Definition
make the bacteria leaky by drilling a hole in it
serum proteins that destroy extracellular microbes

lyse foreign cells
attract phagocytes to it (chemotaxis)
aid phagocytes in their job (opsonization)

harmless until activated
Term
interferons
Definition
kill viruses
alpha, beta, gamma
nonspecifically inhibit spread of viral infections
Term
inflammation
Definition
nonspecific
redness, heat, swelling, pain

acute: develops quickly, short lived. beneficial
chronic: develops slowly, long lived, damage to tissues
Term
fever
Definition
temp over 37 celcius
pyrogens trigger the hypothalamus to increase your temp
Term
third line of defense is the
Definition
specific immune response
Term
3 parts of adaptive immunity
Definition
specificity- certain bacteria
tolerance- dont attack self
memory- various lengths of time it lasts
Term
epitope
Definition
portion of the antigen that the antibody binds to
Term
b lymphocytes
Definition
make antibodies when triggered
arise and mature in red bone marrow
few circulate in blood, found in spleen, lymph nodes
Term
plasma cell
Definition
a triggered b cell
Term
antibodies
Definition
immune system proteins made by activated b cells that bind to specific antigens.

don't kill anything, just identify them for attack and aid phagocytosis
Term
b cells either become
Definition
plasma cells (short, actively producing)
or memory cells (long lived, partially activated)
Term
structure of antibodies
Definition
binding sites (unique part)
variable regions, constant regions, disulfide bonds
2 heavy chains
2 light chains

top half-recognizes infection
lower-sticks out

millions of possibilities and rearrangements
Term
5 classes of antibodies
Definition
IgG- major circulating antibody. highest #
IgM- first to appear after infection
IgA- major antibody in secretions like tears
IgE- involved in allergic reactions
Term
t lymphocytes
Definition
do not produce antibodies
produced in red bone marrow, mature in thymus
circulate in lymph and blood
part of the CELL MEDIATED IMMUNE RESPONSE because they act directly against antigens

1) coordinate the attack
2) kill human cells that have gone bad
Term
cytotoxic t cells
Definition
CD8 cell-surface glycoprotein
directly kill certain cells
Term
helper t cells
Definition
CD4 marker on surface
function to help regulate the activites of b cells and Tc cells

secrete cytokines (protein messengers that determine which immune response will be activated)

type 1- assist Tc cells
type 2- assist b cells
Term
cytokines
Definition
proteins secreted by leukocytes. immune system modulators used for communication
Term
humoral immunity
Definition
type of acquired.
b cell activation and clonal selection
immunity mediated by antibodies
directed against extracellular pathogens
memory cells formed
Term
cell-mediated immunity
Definition
t cells
attack:
-altered self cells
-cells infected with viruses
-intracellular bacteria
-cancer cells

immunity mediated by cells of the immune system against intracellular pathogen and abnormal cells
Term
perforin
Definition
toxic chemical that pokes holes in a cell, making it leak and lyse
Term
natural killer cells
Definition
kill everything.
normal cells express a protein that deactivated nk cells.
otherwise they kill
Term
MHC
Definition
major histocompatibility complex
membrane proteins
present antigens to t cells
important in tissue rejection

MHC 1- processed. present self antigen.
MHC 2- found on APC's. non-self antigens.
Term
t-independent antigen
Definition
large antigen molecules
b cells can bind these directly w/o being processed
Term
t-dependent antigens
Definition
smaller antigens.
b cells require help from helper t cells to target them
need to be processed
Term
antibodies have much quicker responses primary/secondary response
Definition
secondary
Term
clonal selection theory
Definition
explains how the immune system responds to the millions of diff foreign antigens in a highly specific way.

each animal billion lymphocytes.
each lymphocyte reactive to particular antigen.
lymphocytes that are reactive to antigens actually encountered are activated
Term
heavy chain variability
Definition
200 variable region segments
50 diversity regions
4 joining segments
5 constant regions
Term
immune tolerance
Definition
induced unresponsiveness to certain antigens
clonal anergy and anergized cells-destroy those b and t cells that are against yourself
Term
naturally vs. artificially acquired immunity
Definition
natural- immune response against getting sick
artificial- response to antigens introduced via a vaccine
Term
active immunity vs. passive
Definition
active- active response to antigens, making your own antibodies
passive- receiving antibodies from another individuals
Term
active vs. passive immunization
Definition
active- administration of a vaccine so you grow your own b cells
passive- receive preform antibodies
Term
3 types of vaccines
Definition
attenuated
killed
toxoid
Term
attenuated vaccine
Definition
uses pathogens that are living but have reduced virulence
stimulate strong immune response
vaccinated people infect those around them, providing herd immunity.

problem: may cause disease. preg women shouldnt do it
Term
inactivated (killed) vaccines
Definition
vaccines produces with deactivated but whole microbes, or with antigenic fragments of microbes.

both safer than live bc can't replicate or mutate.
less antigenic so have to give them more of it

problem: no herd immunity. weak. allergic reactions due to high dose
Term
toxoid vaccines
Definition
least antigenic.
chemically modified toxins to stimulate active immunity
require multiple doses

problem: possess few antigenic determinants
Term
problems associated with vaccination
Definition
mild toxicity like pain at injection site
anaphylactic shock- allergic reaction
allegations that can cause autism, diabetes, asthma
Term
passive immunity
Definition
administration of preform antibodies.
used when protection from recent infection is needed quickly
they grow the antibody in someone elses body
Term
serology
Definition
antigen-antibody interactions
Term
precipitation test
Definition
easy serological test.
antigens and antibody mixed in the proper proportion form large complexes called precipitates
Term
agglutination tests
Definition
occurs due to cross-linking of antibodies w/ particulate antigens
clumping of insoluble particles. (precipitation is insoluble)

use this if bacteria is not soluble
Term
neutralization
Definition
prevents binding to target site
test if individual has been exposed to a virus
Term
labeled antibody tests
Definition
use antibody molecules that are linked to some molecular label that allows them to be easily detected

flourescent antibody tests
ELISA test
western blot test
Term
differential wbc count test
Definition
can signal signs of disease
-eosinophils: indicate allergies
-leukocytes/neutrophils: indicate bact. diseases
-increase in lymphocytes: viral infection
Term
hypersensitivity is
Definition
any immune response against a foreign antigen that is exaggerated beyond the norm

4 types (immediate, cytotoxic, immune-complex mediated, delayed or cell-mediated)
Term
Type 1 Immediate Hypersensitivity
Definition
localized or systemic rxns that result from release of inflammatory molcules in response to an antigen

develop w/in seconds or minutes

three groups of cells: mast, basophils, eosinophils. release histomine. inflammatory compounds
Term
localized allergic reactions
Definition
hay fever
asthma
hives
Term
systemic allergic reactions
Definition
degranulation of mast cells at once
large amount of histamine

anaphylactic shock can occur

treat with epinephrine
Term
type 2 cytotoxic hypersensitivity
Definition
results when cells are destroyed by an immune response

destruction of blood cells after a bad transfusion or destruction of fetal cells in disease of newborn

your cells kill your own cells
Term
transfusion reactions
Definition
type 2 hypersensitivity
recipient's imune system fends off foreign antigens and destroys them
Term
RH system and Hemolytic Disease of Newborn
Definition
type 2

rh is an antigen in RBC
hemolytic disease- mom's blood tried to kill baby's because don't agree

not everyone has rh
Term
Type 3 immune-complex method hypersensitivity
Definition
due to formation of antigen-antibody complexes (immune complex)

systemic rxns: lupus(make antibody against your own dna), rhematoid arthritis(antibody against joint components)

localized rxns:
hypersensitivity pneumonitis
glomerulonephritis

autoimmune diseases, react to your own cells
Term
glomerulonephritis
Definition
immune complexes circulating in bloodstream are deposited on walls of kidneys
impedes blood filtration

kidney failure, death
Term
Type 4 delayed or cell-mediated hypersensitivity
Definition
inflammation due to contact with certain antigens
12-24 hours after ontact
antigen, APC's, and T-cells

slow bc of t- cells

examples: tuberculin response
allergic contact dermatitis
graft rejection
graft vs. host disease
Term
tuberculin response
Definition
type 4
skin of an individual exposed to TB reacts to an injection

swelling develops if injected into a previously infected individual, otherwise nothing
Term
graft rejection
Definition
type 4
rejection of tissues or organs that have been transplanted

normal immune response against foreign MHC proteins on surface of graft cells
Term
why are fetuses not rejected?
Definition
no much of an MHC expression in the first few months
Term
graft vs. host disease
Definition
when donated bone marrow cells regard the patients cells as foreign which produces an immune response

immunosuppressive drugs used to prevent graft rejection can stop graft-vs-host disease
Term
donor-recipient matching and tissue typing
Definition
MHC compatibility between donor and recipient can be hard to achieve due to a high degree of variability among individuals
Term
immunosuppressive drugs
Definition
valuable for successful transplants and for treating autoimmune disease

classes:
corticosteroids- most common
cytotoxic drugs
immunophilins
lymphocyte-depleting therapies
Term
autoimmune disease
Definition
because the body makes antibodies and Tc cells that target normal body cells
appear spontaneously/random

usually older individuals
usually women
Term
theories of the etiology of autoimmunity
Definition
estrogen can stimulate destruction of tissues by Tc cells
some maternal cells may cross the placenta and trigger disease later in life
environmental factors- after viral infection
genetic factors- some have MHC that in some way promote autoimmunity
Term
2 categories of autoimmune diseases
Definition
single tissue- can commonly affect various tissues (blood cells, endocrine glands, nervous tissue)

systemic diseases- systemic lupus erythematosus, rheumatoid arthritis
Term
autoimmunity affecting blood cells
autoimmunity affecting endocrine organs
Definition
production of autoantibodies to blood platelets. blood does not clot.

production of antibodies affects pancrease and can give you type 1 diabetes. or grave's disease if targets thyroid
Term
autoimmunity affecting nervous tissue
Definition
multiple sclerosis
brain tissue attacked by Tc cells
vision, speech, muscular function hurt
Term
systemic lupus erythematosus
Definition
type 3
attack cells by attacking DNA
results in complex formation
butterfly-shaped rash
gloperulinephritis and arthritis
Term
rheumatoid arthritis
Definition
attack your own joint tissues
type 3 reaction
damage joint tissues-erodes cartilage
Term
immunodeficiency diseases
Definition
conditions resulting from defective immune mechanisms
opportunistic pathogens prey on this

primary- born with it
acquired- developed later in life
*sever stress: excess production of corticosteroids suppresses cell immunity
*malnutrition: inhibit b and t cells

ie. HIV
Term
superantigens
Definition
stimulate a large fraction of t- cells

severe vomiting, shock
act like a multiple infection
responsible for TSS
staph
drop in blood pressure
Term
innate and acquired immunity work together or separately?
Definition
together
Term
innate immunity
Definition
present from birth
not specific
no memory
second exposure not enhancing
cellular and humoral components
not effective w/o adaptive
Term
acquired immunity
Definition
learned by experience
specific
has memory
enhanced by second exposure
cellular and humoral components
not effective w/o innate
Term
metabolic diversity
Definition
microogranisms change their environments and or adapt to change themselves

1st ones to show up, last to leave
can't sustain life w/o them
only a few causes diseases
Term
roles microbes play in our lives
Definition
maintain soil fertility
clean up and recycle dead organic
fix nitrogen gas into usable forms
used to extract minerals from ores (mining)
primary food for marine and freshwater life
make biomass
Term
nature recycle process
Definition
atoms in organisms came from inorganic, dead matter
same atoms will exit living organisms as inorganic matter.

complete cycle, aided by microbes
Term
compost heap
Definition
recycling microbes in the soil that break down organic
Term
green house effect
Definition
greenhouse gases (co2, methane) absorb solar radiation and increase surface temp.

microbes also fix co2
Term
processes of microbes useful to humans
Definition
1) food microbio- use of microbes in production and prevention of illnesses
2) industrial microbio- involves the application of microbes to indust manufac processes and the solution of problems
3)environmental microbio- explores where microbes are found in nature and what they do
Term
bacteria produce food by means of ____
Definition
fermentation. (making acids by metabolizing sugar)
Term
cheese manufacturing
Definition
stomach of cattle has rennin that cleaves the casein protein in milk making it easier to curdle when microbes convert the lactose sugar in milk to acid.
Term
ethanol fermentation
Definition
metabolism of carbs under anaerobic conditions. carried out by teast and some bacteria
Term
microbes as food
Definition
mushrooms
mold in cheese
soy, algae, yeast
eatable algae
Term
industrial canning
Definition
eliminated mesophilic bacteria and endospores
Term
pasteurization
Definition
lowers the # of microbes but some survive
used w/ delicate foods and beverages
Term
lyophilization
Definition
foods are frozen and then a vaccum draws off the ice crystals
Term
gamma radiation
Definition
can penetrate foods and damage dna of microbes
can achieve complete sterilization w/o harming food
Term
benzoic acid
Definition
interferes with enzymatic function
(preservative)
Term
food-borne illnesses
Definition
can occur from consumption of spoiled foods
food poisoning
*infections- result from consumption of living microbes
*intoxications- caused by the consumption of toxins, not the microbe
Term
biosensors
Definition
devices that combine bacteria with electronic measuring devices to detect other bacteria.
Term
bioreporters
Definition
sensors composed of microbes w/ innate signaling capabilities such as ability to GLOW in presence of biological compounds
Term
waterborne diseases
Definition
Cryptosporidium and Giardia (parasites)
they have cysts that survive chlorination
Term
___% of mericans drink unsafe or inadequately treated water
Definition
20
Term
examples of Water borne diseases
Definition
cholera
traveler's diarrhea
giardia intestinalis
Term
potable water
Definition
not completely pure, but safe enough to drink
Term
coliforms
Definition
bacteria that usually live in the human gut, such as e. coli

the indicator organism
Term
most probable number
Definition
# of bacteria per 100 ml of water
Term
ruminant symbiosis
Definition
common ruminants include cattle sheep goats elk deer camels and giraffe.

eat grass, can't break it down, so bacteria produce the enzymes that break it down. then ferment these sugars making products the animal can consume
Term
raw sewage is
Definition
rich in organic nutrients like human excrement. must be removed before sewage released into the environment
Term
EBOM
Definition
easily biodegradable organic matter.
broken down by microbes
also called mineralization
Term
sludge treatment
Definition
solid portion of sewage. mineralize it.
anaerobic process.
methane is the product
Term
liquid portion of sewage treatment
Definition
primary- take pieces of debris out
secondary- break down organic anaerobically
tertiary- remove inorganic matter
Term
biotechnology
Definition
use of microbes to produce high-value commodity such as enzymes, hormones, etc
Term
bioremediation
Definition
biological cleanup of pollutants.
done by microbes
Term
biological magnification
Definition
occurs when compounds are taken up by sequential members of the food chain, thereby concentrating large amounts of it in the later members. BIRD good indicator
Term
archaea live in
Definition
extreme conditions
don't cause diseases
prokar
Term
autotrophs
Definition
organisms that use co2 as primary carbon source
Term
heterotrophs
Definition
use organic compounds as their primary carbon source
Term
black smokers
Definition
found on sea floor. expel superheated water that is rich in minerals
some bacteria can grow there, no o2 no light, hot, extreme
Term
acidophiles vs. alkaliphiles vs. halophiles
Definition
acid- thrive at ph less than 5
alkali- thrive at ph greater than 10
halo- salt-loving
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