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Molecular and developmental neuroscience
a
155
Biology
Undergraduate 2
01/15/2017

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Term
Typical Neuron parts
Definition
Dendrites, cell body, nucleus, axon, axon hillock
Term
What does a verterbrate sensory neuron look like?
Definition
Dendrites at both ends of a long thin axon
Term
Invertebrate motor neuron
Definition
cell body at one end, dendrites at the other
Term
Bipolar neurons
Definition
dendrites at both ends
Term
Pseudo unipolar neurons
Definition
axon branches into two, but proper dendrites only at one end
Term
Unipolar neurons
Definition
cell body opposite to axon, dendritic tree along the way
Term
Resting ion channels
Definition
always open
Term
Voltage gated ion channels
Definition
open transiently in response to changes in the membrane potential
Term
Ligand gated channels
Definition
open in response to a specific extracellular signal
Term
signal gated channel,
Definition
opens/ closes in response to a specifc intracellular module
Term
How do we know the action potential is caused by movement of sodium
Definition
Action potential is reduced if external sodium is removed, drugs which block voltage gated sodium channels will block action potential
Term
Depolarisation is
Definition
all or none
Term
Describe an action potential
Definition
Voltage gated Na+ and K+ channels are closed. cell becomes depolarised. Na+ channels all open, K+ channels start to open, Na+ channels are inactiavated and K+ channels are maximally activated.The potential undershoots the resting potential due to slow K+ closing, causing a hyperpolarised period
Term
Absolute refractory period
Definition
All Na+ channels are inactivated
Term
Partial refactory period
Definition
Most Na+ channels are inactivated
Term
Neurofilaments
Definition
10nm protein filaments that maintain calibre and interity of axonal cylinder
Term
Microfilaments
Definition
5nm filamentous actin
Term
Microtubules
Definition
25nm, consists of 13 subunits of tubulin arranged in spiral structure that grow by addition of tubulin. The minus ( slow growing end) is located at the cell body
Term
Evidence of axonal flow
Definition
weiss and hiscoe discovered that material accumulates behind a ligature
Term
Three types of axonal flow
Definition
fast anterograde - 90/360 mm/day
slow antero grade1-3.5mm/ day
retrograade 90-360mm a day
Term
MAP 1C
Definition
Dynein, retrograde force that uses ATPase, ATP dependent binding to MTs, 1250 kDa, with 9 subunits, requires ATP, Ca ATPase 41% of Mg ATPase
Term
Kinesin
Definition
Anterograde force, ATPase, ATP dependent bind to MTs, 380 kDa with 4 subunits, can use ATP, GTP or ITP
Term
Dynein requires
Definition
dynactin for most functions, it improves the motor efficiency and acts as an adaptor
Term
Structure of kinesin
Definition
Two heads which 'walk' along the microtubule, two intertwined necks for the stalk, with both tails attached to the cargo
Term
Huntingtons and sclerosis
Definition
both have proteins that can perturb transport
Term
The majority of axonal proteins move by
Definition
slow transport
Term
Transport rate is directed by
Definition
the cargo
Term
Neurotransmitters are
Definition
synthesised and stored in the presynaptic nerve, their release is calcium dependent, the action of transmitter is identical to nerve stimulation, and there is a means of transmitter inactivation
Term
Major classes of neurotransmitters
Definition
Quaternary ammonium, mono amines, amino acids, polypeptides, purines, nitric oxide
Term
Quaternary ammonium neurotransmitters
Definition
Acetylcholine
Term
monoamine neurotransmitters
Definition
Noradrenaline, adrenaline, dopamine, 5-HT, Histamine
Term
Amino acid neurotransmitters,
Definition
L glutamate, glycine, GABA, taurine
Term
Polypeptide neurotransmitters
Definition
Opioids, tachykinins, gastrins, somatostatins, VIP
Term
Purine neurotransmitter
Definition
Adenosine AMP,
ADP, ATP
Term
What does nitric oxide bind to
Definition
intracellular targets
Term
Excitatory only neurotransmitters
Definition
Acetylcholine, glutamate, catecholamines, serotonin, histamines, ATP
Term
Inhibitory only neurotransmitters
Definition
GABA, glycine
Term
Excitatory and inhibitory neurotransmitters
Definition
Neuropeptides and nitric oxide
Term
Postsynaptic effecet of endocannabinoids
Definition
Inhibit inhibition
Term
How is Acetylcholine removed
Definition
acetylcholinesterase
Term
Which neurotransmitters are removed by transporters
Definition
Glutamate, GABA, glycine, Catecholamines, serotonin, histamine
Term
How is ATP removed
Definition
ATPase to AMP and adenosine
Term
How are neuropeptides removed
Definition
protesases
Term
How are endocannabinoids removed
Definition
Hydrolysis
Term
How is nitric oxide removede
Definition
Sponaneous oxidation
Term
Microdialysis
Definition
Allow chemicals to move into a collector by diffusion
Term
MALDI
Definition
converts neurotransmitters found on brain tissue slices to derivatives, which are ionsied and mass spectrometrised
Term
How can toxins or antibodies be used to identify receptors
Definition
label them with fluorescent things
Term
Cell attached patch clamp
Definition
recording pipette makes tight contact over a gate and applies mild suction
Term
Whole cell patch clamp
Definition
recording pipette breaks cell membrane but ensures the cytoplasm is continuous with the pipette interior
Term
Inside out patch clamp
Definition
Part of the membrane is torn off by the recording pipette and expose to the rest of the extracellular matrix
Term
Outside out recording
Definition
Part of the membrane is torn off and split in two, before being allowed to anneal, the pipette will record what would normally move into the cell
Term
Affinity chromatography purification of ion channels
Definition
Layer sample on chromatography tube filled with ligands, non binding proteins will pass through and be collected, then the tube is eluted, and the ligand binding proteins will pass through and be collected seperatly
Term
Radioligand binding assay
Definition
Radioactively labelled ligands/drugs which will bind to a receptor are chosen, then incubated with the cells/cell membranes, then wait for it to reach equilibrium , then separate unbound ligands, and measure the amount of radioactivity
Term
What assumptions are made by radioligand binding
Definition
all receptors are equally accesoible to ligands, all receptors are free or bound, neither ligand nor receptor are altered, and the binding is reversible
Term
Ionotropic vs metabotropic receptors
Definition
Ionotropic, neurotransmitter binds to channel and channel and channel opens, metabotropic, neurotransmitter bidns to recepttor, activating g proteins, which cause the ion channel to open through various methods
Term
Methods by which G proteins can open ion channels
Definition
directly, secondary messenger, cyclic CMP, modifying phospholipid turnover (which act ias secondary messengers), change intracellular Ca++ to modify cell fucntion
Term
Norepinephrine effector pathway
Definition
Norpinephrine -> receptor -> g protein -> adenylyl cyclase -> cAMP - > protein kinase A -> increased protein phosphorylation
Term
Glutamate effector pathway
Definition
glutamate, receptor, g protein, phospholipase C, either diacyl glycerol or IP3, diacylglycerol to protein kinase C, IP3 to Ca2+, both cause increased protein phosphylation and activate calcium binding proteins
Term
Dopamine effector pathway
Definition
dopamine, receptor, g protein, decreased adenylyl cyclase, decreased cAMP, decreased protein kinase A, decreased protein phosphorylation
Term
Why bother with a long pathway for an effect
Definition
allows signal amplification, so increases potency of signal
Term
Neuromodulator
Definition
substance released which modifies the action of another transmitter without causing a change in membrane permeability
Term
Co-transmitter-
Definition
peptides released from the same nerve ending to modify excitability of tarfet cell
Term
gaseous neurotransmitters
Definition
activation of NO synthase which produces NO, which will diffuse rapidly to adjacent cells and activate g proteins
Term
Auto receptors
Definition
presynaptic receptors which will respond to released transmitter to modify their own release process
Term
orphan receptors
Definition
identified receptors with unkown endogenous ligands and functions
Term
Phases of memory
Definition
iconic, short term, long term
Term
Iconic memory
Definition
photographic, lost as language develops, persists in adults for short retention times
Term
Short term memory
Definition
limited capacity, retention >10 secs without rehearsel
Term
Long term memory
Definition
stable, long storage, not easily disrupted
Term
Categories of learning
Definition
Associative and non associative, non associative is split into habituation and sinsitization
Term
Categories of memory
Definition
Long term and short term, long term is split into declarative and non declarative
Term
Declerative memory
Definition
medial temporal lobe, facts and events
Term
non declerative memory
Definition
procedural (skills, stored in striatum), Classical - split into muscular ( cerebellum) and Emotional (amygdala)
Term
Faciliation
Definition
drugs or chemicals which enhance memory
Term
transfer
Definition
of memory molecules between organisms
Term
Interruption,
Definition
information coded in nucleic acids
Term
Synaptic plasticity
Definition
is the ability of synapses to strengthen or weaken over time in response to increases or decreases in their activity
Term
Temporal summation
Definition
two potentials being close enough together in time to trigger an action potential
Term
spatial summation
Definition
two potentials being physically close enough to trigger an action potential
Term
When the presynaptic and post synaptic elements are both active
Definition
the synapse is stronger
Term
Hebb's postulate
Definition
Neurones that cause action potentials in the postsynaptic cell that are correlated with the activity in the postsynaptic cell will gain a stronger connection, neurons that do not will grow weaker and degrade
Term
Habituation
Definition
repeated stimuli results in a reduced response
Term
Sensitisation
Definition
overly strong stimulus will overcome habituation
Term
Difference between normal action potential, and habituation and sensitisation action potential,
Definition
habituation - reduced Ca++ channel opening, reduction of transmitter release
sensitisation - cyclic AMP is produced, closing K+ channels and leading to an influx of Ca++, causing more transmitter release
Term
Difference between long term and short term synaptic changes
Definition
short term effects are modulation of existing ion channel function, long term involves changes in protein syntheses, such as activation of catalytic subunit of protein kinase in the nucleus, which phophorylates CRED, turning on genes which produce the synaptic changes
Term
What does CREB do
Definition
activates an mRNA that targets synapses
Term
Fertilization to functional
Definition
proliferation, specification, migration, determination, differentiation
Term
Human early development
Definition
fertilization-> cleavage ->blastula (first layers) -> trophoblast -> gastrula
Term
Ectoderm becomes
Definition
skin, brain, spinal cord and sensory organs
Term
Mesoderm becomes
Definition
heart, skeletal muscles, kidneys, blood cells, connective tissues
Term
Endoderm becomes
Definition
gastrointestinal tract, lungs, pancreas, liver
Term
Formation of neural crest
Definition
shaping, folding, elevation, convergence, closure
Term
Division of ectoderm
Definition
outer, neural crest, neural tube
Term
Neural crest cells become
Definition
PNS, adrenal medulla
Term
Neural tube becomes
Definition
brain, neural pituitary, spinal cord
Term
Mesoderm from the dorsal side can
Definition
induce nearby cells to become nervous system and other dorsal fates
Term
Model for induction of neural fate
Definition
Ectoderm is non-neural until signal makes it competent for neural, but BMPs prevent it from becoming actual neural, until antagonists produced by the dorsal midline mesoderm inhibit BMP
Term
BMPs
Definition
inhibit neural fate, making ectoderm cells likely to become epidermal
Term
FGFs
Definition
promote neural fate
Term
When it is first formed, the neural tube is a
Definition
pseudostratified epitheleum of proliferating cells
Term
As neural cells begin to differentiate
Definition
they move outwards from the proliferating epithelium, so proliferating cells are always lining the lumen
Term
What decides where a cell ends up and what it becomes
Definition
time of cell birth
Term
Shh
Definition
Sonic hedgehog gene/protein
Term
French flag model
Definition
several different proteins being expressed at different lengths from the plate, as Shh is expressed at the ventral plate, and the diffusion gradient of Shh decides the proteins expressed, which decide the fate of the cell
Term
In the CNS, development progresses from
Definition
anterior to posterior
Term
Pax7
Definition
early marker for presumptive neural crest
Term
Neural crest cells only become specialised
Definition
after migration
Term
Cells of the PNS that do not come from the neural crest come from
Definition
the placodes
Term
Axonogenesis
Definition
Neurons born -specify/migrate - > differentiate - axons and dendrites elongates, synapses for and transmitters/receptors are produced
Term
Pioneer microtubules
Definition
extend into filapodia when growth cone is active
Term
faciculate
Definition
when a neuron follows an earlier neurons path
Term
Cell surface positive guidance cues
Definition
Cell adhesion molecules - calcium independent, cadherins - calcium dependent, integrins
Term
Cell surface negative guidance cues
Definition
Semaphorin
Term
Secreted positive guidance cues
Definition
Netrin
Term
Secreted negative guidance cues
Definition
Netrins, semphorins
Term
Commissural neurons
Definition
crucial for integration of sensory modalities, motor commands and processing of brain functions
Term
After crossing the midline axons join one of three fasciclin II positive fascicles. Which ones do what?
Definition
Axons expressing robo1 join the closest fascicle, expressing robo1 and robo3 join the next closest. expressing robo 1 ,2 and 3 join the third fascicle. this is because they are growing as far as possible away from slit
Term
fascicle
Definition
already existing path for neurons
Term
Slit and robo
Definition
mediate the repulsive properties of the midline
Term
CNS blocks to nerve recovery
Definition
inhibition by myelin associated inhibitors, e.g. NOgo produced by glia at damage site, astroglial scarring is a chemical and physical barrier
Term
Wallerian degeneration
Definition
Distal stump degenerates induced by activation of proteases and Ca++ influx, components are recycled by macrophages and schwann cells, allowing full regeneration
Term
Molecular basis for regeneration
Definition
Peripheral lesion leads to increased cAMP. Injection of a cAMP analagou allows CNS regeneration. Blocking PKA activity after peripheral lesion blocks effect on CNA arm.PKA can inhibit Rho activity (Rho inhibits regeneration).
Term
How do antibodies vs NogoA and rho aid regeneration
Definition
Binding of nogo receptor prevents activation of Rho pathway, and rho inhibits regeneration
Term
Why is glial scarring necessary
Definition
damaged nerves release ions excitatory amino acids and free radicals which causes secondary degeneration
Term
Astrocytes
Definition
provide trophic support for surviving neurons
Term
chondroitinase
Definition
allows visual plasticity to be ractivated in rats
Term
What is a neural stem cell
Definition
multipotent, self-renewing, in culture form neurospheres, turn into neuronal or glial progenitors, then specialize as neurons (from neuronal progenitor) or astrocytes/ oligodendrocytes (glial progenitor)
Term
Issues with neural stem cell treatments
Definition
cancer, rejection, "ethics", side effects
Term
Main targets of the retina
Definition
superior colliculus, dorsal thalamus
Term
The retinotectal map
Definition
along surface of retina to exit point, netrin 1 at nerve exit, at optic chiasma, most axons cross to opposite side, but some dont,
Term
temporal axons are repelled by
Definition
posterior membranes
Term
removal of NGF causes
Definition
apoptosis
Term
neurotrophins bind preferentially to
Definition
Trks
Term
How do neurotrophic factors increase neuronal survival
Definition
cause a reduction in the release of cytochrome c, which results in less cell death
Term
Gap junction
Definition
channels provide a low resistance pathway between cells
Term
Axodendritic
Definition
Axon to dendrite transmission
Term
dendrodendritic
Definition
dendrite to dendrite transmission
Term
axoaxonic
Definition
axon to initial segment of acon
Term
reciprocal
Definition
dendrite a to dendrite b, dendrite b to dendrite a
Term
stages in synaptogenesis
Definition
growth cone approaches a newly formed myotube, an unspecialised functional contact is formed, the nerve terminal accumulates synaptic vedicles containing acetylcholine and a basal lamina forms in the synaptic ceft, multiple axons converge on a single site, all axons except one are eliminated and the survivor matures
Term
Agrin acts on
Definition
a kinase called MuSK, which affects a protein called rapsyn, that anchors acetylcholine receptors to the cytroskeleton
Term
Spinal cord motor neuron axons can be up to
Definition
1 metre long
Term
In dendrites, protein synthesis occurs
Definition
locally
Term
In the synaptic regions, the major cytoskeletal filament is formed by
Definition
actin
Term
Three major groups of Kinesins
Definition
N-terminal, middle, C terminal
Term
N terminal KIFs generall move towards
Definition
microtubule plus ends
Term
C terminal KIFs move toward
Definition
minus ends
Term
The KIFs that depolymerize microtubules are
Definition
KIF2a and KIF2c
Term
Two types of dynein protein
Definition
cytoplasmic and axonemal
Term
Cytoplasmic dynein is used for
Definition
intraceullular transport
Term
Myosin proteins
Definition
bind to actin and use ATP to generate force
Term
What occurs after the axon of a CNS neuron is cut?
Definition
Ca2+ builds up in the cut ends, large vesicles fill the axon. the calcium binds witha receptor causing release of SNARE complexes that trigger vesicle fusion. This seals the axon
Term
How do filamentous cargoes move along microtubules
Definition
Long periods of rest, movements in one direction
Term
How do vesicular cargoes move along microtubules
Definition
frequent pauses and directional switches
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