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Phylogeny
N/A
132
Biology
Undergraduate 1
02/26/2013

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Term
Phylogeny
Definition
the evolutionary history of a species or group of related species
Term

systematics

 

Definition

an analytical approach to understanding the diversity and relationships of organisms

 

depict evolutionary relationships in branching phylogenetic trees

Term
taxonomy
Definition
the ordered division of organisms into categories based on a set of characteristics used to assess similarities and differences
Term
binomial nomenclature
Definition

Linnaeus invented it

two part format of the scientific name of an organism

e.g. Homo sapiens

Term
hierarchical classification
Definition

domain

kingdom, phylum, class, order, family, genus, species`

 

Keep Pipes Clean OF Gas

Term
Humans Classifcation
Definition

Kingdom-Animalia

Phylum-Chordata

Class-Mammalia

Order-Primates

Family-Hominidae

Genus-Homo

Species- H. sapiens

Term
cladogram
Definition
a diagram depicting patterns of shared characterisitics among species
Term
clade within a cladogram
Definition
a group of species that includes an ancestral species and all of its descendents
Term
monophyletic grouping
Definition

made up of ancestral species and all of its descendents

 

legitimate taxa in cladistics

Term
paraphyletic grouping
Definition
consists of an ancestor and some, but not all, of that ancestor's descendents
Term
polyphyletic grouping
Definition
grouping that lacks the common ancestor of the species in the group
Term
shared ancestral characteristic
Definition
homologous structure that predates the branching of a particular clade from other members of that clade
Term
shared derived characteristic
Definition
evolutionary novelty unique to a particular clade
Term
gene duplication
Definition

the production of multiple copies of a gene within the genome

 

important type of mutation in evolution because it increases the number of genes in the genome

Term
orthologous genes
Definition

genes found in a single copy in the genome

 

diverge only once speciation takes place

Term
paralogous genes
Definition

result from gene duplication

 

more than one copy in the genome

 

can diverge within the clade that carries them

 

the Globin gene family has resulted from several gene duplication events

Term
One thing that E. coli and other bacteria have in common with eukaryotes is the presence of _______.
Definition
ribosomes
Term

Prokaryotes

unicellular or multicellular?

Definition
unicellular
Term
Prokaryotes
Definition

unicellular

no membrane-bound organelles

circular chromosomes

Term
prokaryotic shapes
Definition

spheres (cocci)

rods (bacilli)

spirals (spirilli)

Term

cell wall

 

Definition

maintains cell shape, provides physical protection, prevents cell from bursting in a hypotonic enviroment

 

composed of peptidoglycan in bacteria

 

may also have an outer phospholiped membrane

Term
prokaryote capsule
Definition

a sticky layer of polysacchride or protein

may cover the cell wall of many prokaryotes

Term
What allows prokaryotes to stick to their substrate or other individuals in a colony?
Definition
fimbriae and pilli
Term
gram +
Definition

cocci

purple

Term
gram -
Definition

bacilli

pink

Term
motile bacteria move by means of _____
Definition
flagella
Term
Gram-negative bacteria have ______ peptidoglycan than gram-positive cells and their cell walls are ____ complex structurally.
Definition
less;more
Term
Groups of Staphylococcus look like...
Definition
clusters of grapes
Term
Can prokaryotes reproduce by binary fission?
Definition
yes, they can divide every 1-3 hours
Term
asexual reproduction
Definition
reproduces identical daughter cells
Term
bacterial conjugation
Definition

transfer of genetic material between two bacteria

 

not necessarily the same species (horizontal gene transfer)

 

plasmids are usually transmitted from donor through a sex pilus

Term
transformation
Definition
uptake of foreign DNA from the enviroment
Term
transduction
Definition
viruses carry bacterial DNA from one host cell to another
Term
Which type of horizontal gene transfer involves a pilus that makes direct contact between 2 cells?
Definition
conjugation
Term
obligate aerobes
Definition
require oxygen
Term
facultative anaerobes
Definition

can survive with or without oxygen

 

(fermentation when no O2 present)

Term
obligate anaerobes
Definition

are poisoned by O2

 

fermentation

 

anerobic respiration- substances other than O2 act as electron acceptors

Term
Can some prokaryotes metabolize nitrogen?
Definition
yes
Term
in nitrogen fixation, bacteria...
Definition
convert N2 (nitrogen gas) to NH3 (ammonia)
Term
nitrogen-fixing cells
Definition
heterocytes
Term
Chemautotrophs use _______ as an energy source and _______ as a carbon source.
Definition
inorganic compounds; CO2
Term
Domain Bacteria
Definition

Proteobacteria

Chlamydias

Spirochetes

Gram-positive bacteria

Cyanobacteria

Term
Which type of bacteria can live in the presence of oxygen?
Definition
only obligate aerobes and facultative anaerobes
Term
Archeans are often found in what type of enviroment?
Definition
extreme
Term
thermophiles
Definition
thrive in very hot enviroments
Term
barophiles
Definition
thrive under high pressure
Term
methanogens
Definition
live in anoxic enviroments (e.g. swamps and marshes); produce methane as a waste product
Term
halophiles
Definition
live in high saline enviroments
Term
How would you classify a prokaryote that lives in hot springs that have a low pH at Yellowstone National Park?
Definition
thermoacidophile
Term
What are two words that describe the kingdom Protista?
Definition

single-celled and eukaryotic

 

 

 

mostly unicellular, but some colonial and multicellular

Term

protists

photoautotrophs

Definition
contain chloroplasts, photosynthesize
Term

protists

heterotrophs

Definition
absorb organic molecules or injest larger particles
Term

protists

mixotrophs

Definition
combine photosynthesis and heterotrophic nutrition
Term
much protist diversity has its origin in...
Definition
endosymbiosis
Term
plastid-bearing lineage evolved into...
Definition
red and green algae
Term
What is a key identifying characteristic of a plastid that is the result of endosymbiosis?
Definition
more than 2 membranes
Term
motility in protists
Definition

flagellates

ciliates

amoeba

Term
flagellates
Definition
move by one or more flagella
Term
ciliates
Definition
move by coordinated movement of cilia
Term
amoebae
Definition
move by means of psuedopodia
Term

protists

zygotic life cycle

Definition

haploid cells transform into gametes, gametes fuse to from zygotes

 

(e.g. Plasmodium, which causes malaria)

Term

protists

alternation of generations

Definition
produce 2 types of multicellular organisms (n and 2n); many algae and all land plants
Term
protists are a ___________ group
Definition
paraphyletic
Term

protists

5 supergroups

Definition

Excavata

Chromalveolata

Rhizaria

Archaeplastida

Unikonta

Term
main feature of ______ is a spiral or crystalline rode of unknown function inside their flagella
Definition
euglenozoans
Term
kinetoplastids
Definition

single, large mitochondria containing an organized mass of DNA called a kinetoplast

 

(e.g. parasite Trypansoma, causes African sleeping sickness)

Term
euglenids
Definition

have one or two flagella that emerge from a pocket at one end of the cell

 

some species are mixotrophs

Term
dinoflagellates
Definition

alveolate

diverse group of aquatic photoautotrophs and mixotrophs

abundant components of marine and freshwater phytoplankton

two flagella make them spin as they move through the water

cellulose plates

rapid growth of some dinoflagellates is responsible for "red tides," which can be toxic to humans

some dinoflagellates are bioluminescent

Term
apicomplexans
Definition

alveolate

parasites of animals, some cause human diseases (e.g. Plasmodium causes malaria)

apex contains a complex of organelles for penetrating host RBCs

apicoplast-nonphotosynthetic plastid

Term
Ciliates
Definition

alevolate

named for their use of cilia to move and feed

have 2 nuclei

macronucleus-control everyday functions

micronucleus- used in conjugation

Term
Sex in ciliates involves _________.
Definition
the exchange of haploid micronuclei between 2 individuals
Term
Bacillariophyta (Diatoms)
Definition

stramenopile

unicellular algae (photoautotrophs)

silica test

major components of the phytoplankton

 

Term
diatomaceous earth
Definition

accumulated diatom tests in marine sediments

used in toothpastes and filter media

Term
Phaeophyta (brown algae)
Definition

stamenopile

largest and most complex algae

all multicellular and mostly marine seaweeds

cartenoid pigments give them brownish/olive color

Term
Alternation of generation implies a multicellular diploid, spore producing phase alternating with a multicellular _______.
Definition
haploid, gamete producing phase
Term

Foraminiferans

 

Definition

named for their porous, generally multichambered tests made of calcium carbonate

pseudopodia extend through pores in the test

foram tests in marine sediments form an extensive fossil record

Term
radiolarians
Definition

marine protists with silica tests

pseudopodia known as axopodia

(used to capture and phagocytose microorganisms)

Term
rhodophyta (red algae)
Definition

reddish in color due to accessory pigment called phycoerythrin

usually multicellular

red algae, Prophyra, is eaten as crispy sweets or used to wrap sushi

Term
green algae
Definition

named for their green chloroplasts

chlorophyll a and b main pigments

divided into 2 main groups- chlorophyta and charophyta

Term
Amoebozoans
Definition

type of Unikonts

have lobe-shaped, rather than threadlike, pseudopodia

Term
Plasmodial Slime Molds
Definition

form a mass called a plasmodium

 

coenocytic- multinucleate from the repeated division of nuclei without cytoplasmic division

extends pseudopodia through decomposing matter, engulfing food by phagocytosis

Term
Cellular Slime Molds
Definition

form multicellular aggregates

(cells separated by their membranes)

Dictyostellium discoideum is an experimental model for studying the evolution of multicellularity

Term
Dinoflagellates, apicomplexans, and ciliates are placed in the Alveolate because they all have _______.
Definition
membrane-bound sacs under their plasma membranes
Term

fungi are heterotrophs, but do not ___

their food

Definition
injest
Term
fungal nutrition
Definition

secrete coenzymes into their surroundings that break down complex molecules

absorb smaller organic molecules

Term
fungi exhibit diverse lifestyles
Definition

decomposers (saprotrophs)

parasites

mutualistic symbionts

Term
the morphology of multicellular fungi enhances...
Definition
absorption of nutrients
Term
fungi consist of hyphae that are grouped together into...
Definition
mycelia
Term
What are most fungi cell walls made out of?
Definition
chitin
Term
some fungi have hyphae divided into cells by ____, with ____ allowing cell-to-cell movement of material
Definition
septa, pores
Term
coenocytic fungi lack...
Definition
septa
Term

Which of the following is not a job performed by any fungi?

 

decomposer

parasite

predator

producer

Definition
producer
Term
some fungi have _______ that allow them to capture animals and penetrate the tissues of their hosts
Definition
hyphae
Term
What are mutualisms between fungi and plant hosts?
Definition
mycorrhizae
Term
ectomycorrhizae
Definition
surrounds root cells
Term
endomycorrhizae
Definition
extends hyphae through root-cell wall
Term
sexual reproduction of fungi
Definition

plasmogamy

heterokaryotic stage

karyogamy

the diploid phase

meiosis-producing haploid spores

Term
plasmogamy
Definition
cell fusion
Term
karyogamy
Definition

nuclear fusion

 

in fungi, cells have haploid nuclei from 2 parents

Term
many fungi, such as molds, produce spores asexually on...
Definition
conidia
Term
single-celled yeasts reproduce by...
Definition
buds (asexual)
Term
molds and yeasts with no known sexual stage are classified as...
Definition
deuteromycetes
Term
deuteromycetes
Definition
imperfect fungi
Term
In the cells of a heterokaryotic mycelium, how many nuclei are there and what is the ploidy?
Definition
two or more, haploid
Term
When the two nuclei in the cell of a dikaryotic mycelium fuse within the fruiting body, what cell type is produced?
Definition
zygote
Term
chytrids
Definition

fungi classified in the phylum Chytridiomycota

saprobic or parasitic

unique in having flagellated spores called zoospores

Term
zygomycetes
Definition

fungi in the phylum Zygomycota

include molds, parasites, and commensal symbionts

named for their sexually produced zygosporangia

Term
glomeromycetes
Definition

fungi in the phylum Glomeromycota

form distinct type of endomycorrhizae called arbuscular mycorrhizae

about 90% of all plants have mutualistic relationship with glomeromycetes

Term
Your parents are coming to visit and you immediately run to the pantry to throw away the loaf of bread withthe black fuzzy stuff on it.  What phylum fungi did you just trash?
Definition
Zygomycote
Term
ascomycotes
Definition

fungi in the phylum Ascomycota (sac fungi)

defined by the production of asexual spores in asci contained ascocarps

 

Term
basidiomycetes
Definition

phylum Basidiomycote (club fungi)

includes mushrooms and shelf fungi

defined by clublike structure called a basidium

mycelium is usually long lived and dikaryotic (can send up mushrooms in just a few hours)

Term
Can fungi form symbiotic relationships with plants and animals?
Definition
yes
Term

some fungi help animals break down...

 

Definition

plant material

 

guts of cows and other grazing animals

Term
some ants and termites raise...
Definition
fungi in farms
Term
endophytes
Definition

mutualism between plant and fungus

takes place in leaves and other tissues

Term
lichens
Definition

symbiotic relationship b/w photosynthetic microorganisms and a fungus

ver hardy organisms that can occupy harsh enviroments

fungal symbiont is most often an ascomycete

photosynthetic symbiont is either single-celled green algae or cyanobacteria

asexual reproduction by fragmentation or release of soredia

Term
What are the three general growth forms of a lichen?
Definition

futicose

foliose

crustose

Term
The direct ancestors of terrestrial plants are considered to be...
Definition
charophytes
Term
What have been identified as the closest relatives of land plants?
Definition
charophyceans
Term
4 key traits land plants share with charophyceans
Definition

1.  rose-shaped complexes for cellulose synthesis

2. peroxisome enzymes

3. structure of flagellated sperm

4. formation of phragmatoplasts

Term
4 key traits in nearly all land plants
Definition

1. alternation of generations and multicellular, dependent embryos

2. apical meristems

3. walled spores produced in sporangia

4. multicellular gametangia

Term
bryophytes are represented today by 3 phyla of small herbaceous (nonwoody) plants
Definition

liverworts

hornworts

mosses

Term
bryophyte gametophyte
Definition

gametophytes are the dominant stage of the life cycle

produced flagellated sperm in antheridia and ova in archaegonia

form ground hugging carpets and at most are only a few cells thick

Term
bryophyte sporophytes
Definition

grow out of archegonia

consist of a foot, a seta, and a sporangium

hornwort and moss sporophytes have stomata

Term
The bryophytes have independent _____ as well as attached dependent _______.
Definition
gametophytes, sporophytes
Term
if a plant has a dominant sporophyte, then the gametophytes are tiny plants that...
Definition
grow on or below the soil surface
Term

sporophytes of seedless vascular plants are the...

 

Definition
larger generation
Term
two phyla of seedless vascular plants
Definition

lycophta (club mosses, spike mosses, and quillworts)

pterophyta(ferns, horsetails, and whisk ferns)

Term
What are the two types of vascular tissue?
Definition

xylem-conducts most of the water and minerals

phloem-distributes sugars, amino acids, and other organic products

Term
Plants reproduce two types of reproductive cells:
Definition
spores and gametes
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